Rapidly detect and identify microbial species information from the genomic data of clinical or environmental samples
Pathogen
v1.0.0
Average Nucleotide Identity (ANI)
平均核苷酸一致性（ANI）分析
Using pyani to compute the genomic-level similarity of genomes
Tool
v1.0.0
Format Conversion
数据格式转换
在FASTA，GFF，Genbank和FAA间格式转换。
病原分型工具
Serotyping
v2.0.1
Multilocus sequence typing (MLST)
多位点序列分型(MLST)
Bacterial typing method based on nucleic acid sequencing determines the sequence type of the strain through housekeeping gene analysis
Serotyping
v1.0.0
Escherichia Coli Serotype Prediction
大肠杆菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Salmonella Serotype Prediction
沙门氏菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Shigella Serotype Prediction
志贺菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Vibrio Cholerae Serotype Prediction
霍乱弧菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Klebsiella Pneumoniae Serotype Prediction
肺炎克雷伯菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Streptococcus Pneumoniae Serotype Prediction
肺炎链球菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Vibrio Parahaemolyticus Serotype Prediction
副溶血弧菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Acinetobacter Baumannii Serotype Prediction
鲍曼不动杆菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Yersinia Enterocolitica Serotype Prediction
小肠结肠炎耶尔森菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Yersinia Pseudotuberculosis Serotype Prediction
假结核耶尔森菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Pseudomonas Aeruginosa Serotype Prediction
铜绿假单胞菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Morganella Morganii Serotype Prediction
摩氏摩根氏菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Plesiomonas Shigelloides Serotype Prediction
类志贺邻单胞菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Proteus Serotype Prediction
变形菌属血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Providencia Serotype Prediction
普罗威登斯菌属血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Molecular classification of Respiratory Syncytial Virus
呼吸道合胞病毒分子分型
Molecular classification of Respiratory Syncytial Virus sequences using R package resvidex
Serotyping
v1.0.0
Drug resistance analysis of Mycoplasma Pneumoniae
肺炎支原体耐药分析
Analyze the mutation status of common loci A2063G, A2064G, C2617G, and A2067G within the drug-resistance genes of Mycoplasma pneumoniae
Serotyping
v1.0.0
Streptococcus Suis Serotype Prediction
猪链球菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Mycoplasma Pneumoniae Lineage Designation
肺炎支原体分群
Defining Mycoplasma Pneumoniae lineages based on variation site information from four lineages
Serotyping
v1.0.0
MLVA Typing of Bordetella pertussis
百日咳胞特菌MLVA分型
Multiple-locus variable-number tandem repeat analysis (MLVA) of Bordetella pertussis strains
Serotyping
v1.0.0
Vibrio Fluvialis Serotype Prediction
河流弧菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
SARS-CoV-2 Lineage Designation
新冠谱系划分
Use Pangolin to designate the dynamic nomenclature of SARS-CoV-2 lineages
Serotyping
v1.0.0
Neisseria Meningitidis Serotype Prediction
脑膜炎奈瑟菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Escherichia genus strain phylotyping
大肠杆菌属菌株系统发育分型
Using ClermonTyping for Rapid Systematic Phylotyping of Escherichia Genus Strains
Serotyping
v1.0.0
Listeria Monocytogenes Serotype Prediction
单增李斯特菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Pneumococcal Sequence Cluster analysis
肺炎链球菌序列簇（GPSC）分析
Global Pneumococcal Sequence Cluster (GPSC) is an international genomic definition of a pneumococcal lineage defined using the clustering software PopPUNK
Serotyping
v1.0.0
Lineage classification of Mycobacterium tuberculosis
结核分枝杆菌复合体（MTBC）菌株谱系划分
Using Tuberculosis Lineage Genotyping (TbLG) technology, we can rapidly and accurately classify the lineages of Mycobacterium tuberculosis Complex (MTBC) isolates
Serotyping
v1.0.0
Spa typing of Staphylococcus aureus
金黄色葡萄球菌spa型预测
The spaTyper service predicts the Staphylococcus aureus spa type from genome sequences
Serotyping
v1.0.0
Using Genomics to Predict the FimH Type of E. coli
大肠杆菌fimH亚型鉴定
Using FimTyper to identify the FimH type in fully or partially sequenced isolates of Escherichia coli
Serotyping
v1.0.0
Campylobacter Serotype Prediction
弯曲菌属血清型
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Citrobacter Serotype Prediction
柠檬酸杆菌属血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Cronobacter Serotype Prediction
克罗诺菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Enterobacter Aerogenes Serotype Prediction
产气肠杆菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Group B Streptococcus/Streptococcus agalactiae Serotype Prediction
B族链球菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Haemophilus Influenzae Serotype Prediction
流感嗜血杆菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
Serotyping
v1.0.0
Legionella Serotype Prediction
军团菌血清型鉴定
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
基因组元件预测与注释工具
Annotation
v1.0.0
Prokaryotic genome annotation
原核生物基因组注释
Using Prokka annotation pipeline to annotate the genome and perform file format conversion, including converting fa files to faa, gff, …
Annotation
v1.0.0
Type III Secretion System Prediction
三型分泌系统预测
EffectiveT3 software was used to identify and predict type III secretion systems by scoring each amino acid sequence according to …
Annotation
v1.0.0
Type VI Secretion System Prediction
六型分泌系统预测
Based on the web-based resource SecReT6, the T6SS gene cluster and various T6SS-related proteins, including T6SS regulators (T6SRs), T6SS accessory …
Annotation
v1.0.0
Virulence Gene Prediction
毒力基因预测
Based on the characteristics of bacterial sequences, virulence-related genes in the genome are identified
Annotation
v1.0.0
Resistance Gene Identifier
抗性基因预测
Studying antibiotic resistance, rapid and quantitative analysis of resistance-related genes in the genome
Annotation
v1.0.0
Pseudogene Prediction
假基因预测
Detecting pseudogene candidates from the annotated files of genomes
Annotation
v1.0.0
CAZy Analysis
碳水化合物活性酶 (CAZy)分析
Performing prediction of carbohydrate-active enzymes and functional annotation using the emapper software
Annotation
v1.0.0
Insertion Sequence (IS) Analysis
插入序列（IS）分析
The IS (Insertion Sequence) was analyzed and genotyped based on the bacterial genetic information, the similarity among transposases, and the …
Annotation
v1.0.0
Genomic Island Prediction
基因组岛预测
Using the IslandPath-DIMOB software to predict genomic islands.
Annotation
v1.0.0
Secondary Metabolite Prediction
次级代谢产物预测
The antiSMASH database was used to predict gene clusters of secondary metabolites in fungal/bacterial genomes
Annotation
v1.0.0
Transporter Classification Analysis
转运蛋白分类
Unknown transmembrane transporters were classified and annotated using the structural, functional, and taxonomic information from the TCDB (Transporter Classification Database)
Annotation
v1.0.0
Prophage Prediction
前噬菌体预测
Combining sequence similarity matching and machine learning classification models of genetic characteristics, predict active prophages from whole-genome sequences
Annotation
v1.0.0
Protein Annotation
蛋白注释
Based on the Swiss-Prot database, high-quality annotation of protein information and functions for genomes
Annotation
v1.0.0
Pathogen-Host Interaction Analysis
病原体-宿主互作分析
Based on the Pathogen-Host Interactions Database (PHI-base), pathogenic genes, virulence genes, effector protein genes, and other relevant genes in pathogens …
Annotation
v1.0.0
Non-coding RNA Annotation
非编码RNA（ncRNA）注释
Using the cmscan program in conjunction with Non-coding RNA family models from the Rfam database, search for and annotate potential …
Annotation
v1.0.0
Salmonella Pathogenicity Island (SPI) finder
沙门氏菌致病岛鉴定
A tool for identifying and locating Pathogenicity Islands in Salmonella
