Pathogen-Host Interaction Analysis
- Analysis
- 6c8046c276b1
- 2025-06-27 16:19:53
Results
The following table shows the PHI gene prediction results
Tips:
- Query: Contig ID
- Query Length: Length of the aligned region in the query
- Subject: Organism name and PHI ID of the top hit match
- Subject Length: Length of the aligned region in the subject
- Gaps: Insertions or deletions introduced to maximize alignment matches
- Positives: Percent coverage of match to top hit in PHI
- Identities: Percent identity of match to top hit in PHI
- E-value: The statistical significance of the match
- Score: Bitscore value of match to top hit in PHI
Reference
If you use this tool in your research, please cite following reference:
TracePatho. 2025. TracePatho: All-in-one microbial analysis platform. Accessed July 9, 2025. https://tracepatho.com/.
Buchfink B, Reuter K, Drost HG. Sensitive protein alignments at tree-of-life scale using DIAMOND. Nat Methods. 2021;18(4):366-368. doi:10.1038/s41592-021-01101-x
Urban M, Cuzick A, Seager J, et al. PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions. Nucleic Acids Res. 2022;50(D1):D837-D847. doi:10.1093/nar/gkab1037