Using Genomics to Predict the FimH Type of E. coli | TracePatho

大肠杆菌fimH亚型鉴定

*Genome sequence in FASTA format:

Load Example

拖放文件到此处或点击上传

文件必须是FASTA格式, 后缀名为.fna, .fa, .fasta.

Upload DNA sequence file(s) in FASTA format to start the analysis

*alignment_tool:

*Identity threshold:

*The minimum length of the overlap:

应用信息

使用FimTyper鉴定大肠杆菌基因组完成图或草图中的FimH类型

Running time: <3min
Sample input: E.coli_fim.fna
Example output: SAMPLE result

参考文献

如果您在研究中使用了本工具，请在文章中引用下列文章:

TracePatho. 2025. TracePatho: All-in-one microbial analysis platform. Accessed July 9, 2025. https://tracepatho.com/.

Roer L, Tchesnokova V, Allesøe R, et al. Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles. J Clin Microbiol. 2017;55(8):2538-2543. doi:10.1128/JCM.00737-17