Prophage Prediction
- Analysis
- 3ed68b49d7db
- 2025-06-27 15:56:47
Results
Number of prophages predicted: 0
The coordinates of each prophage identified in the genome:
| Prophage | Contig | Start | Stop |
|---|
This is the coordinates of each prophage identified in the genome, and their att sites.
| Prophage | Contig | Start | Stop | attL(start) | attL(end) | attR(start) | attR(end) | attL(seq) | attL(seq) | Explanation |
|---|
Tips:
- Prophage: Prophage number;
- Contig: The contig upon which the prophage resides;
- Start: The start location of the prophage;
- End: The end location of the prophage;
- attL (start): start of attL;
- attL (end): end of attL;
- attR (start): start of attR;
- attR (end): end of attR;
- attL (seq): sequence of attL;
- attR (seq): sequence of attR;
- Explanation: The explanation of why this att site was chosen for this prophage
Prophage Diagram
Reference
If you use this tool in your research, please cite following reference:
TracePatho. 2025. TracePatho: All-in-one microbial analysis platform. Accessed July 9, 2025. https://tracepatho.com/.
Akhter S, Aziz RK, Edwards RA. PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies. Nucleic Acids Res. 2012;40(16):e126. doi:10.1093/nar/gks406