Escherichia genus strain phylotyping
- Analysis
- 1b2a5e14960e
- 2025-06-27 16:51:07
This table shows the results for all samples analyzed.
- Sample: Name of the sample analyzed
- Genes: All genes detected with PCR (including verification genes that may not be useful)
- Quadruplex: A representation of presence(+)/absence(-) for the arpA, chuA, yjaA and TspE4.C2 genes
- Supporting Alleles: When the quadruplex PCR gives an ambiguity, this column shows the alleles specific for groups C and E
- Phylogroup: Final conclusion about phylogroup
- Note：A dash (–) indicates that the queried genome passed species identification and is approved for analysis; otherwise, only the identification result is displayed.
If you use this tool in your research, please cite following reference:
TracePatho. 2025. TracePatho: All-in-one microbial analysis platform. Accessed July 9, 2025. https://tracepatho.com/.
Beghain J, Bridier-Nahmias A, Le Nagard H, Denamur E, Clermont O. ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping. Microb Genom. 2018;4(7):e000192. doi:10.1099/mgen.0.000192
Clermont O, Dixit OVA, Vangchhia B, et al. Characterization and rapid identification of phylogroup G in Escherichia coli, a lineage with high virulence and antibiotic resistance potential. Environ Microbiol. 2019;21(8):3107-3117. doi:10.1111/1462-2920.14713