Type VI Secretion System Prediction | TracePatho

六型分泌系统预测

*Genome information in GenBank format:

Upload a file in GenBank format and run the prediction

*Select similarity search tool:

*E-value threshold for similarity search:

E-value threshold for similarity search

*Maximum interval (bp) between two co-localized T6SS components:

(0~100000) bp

*Minimum number of T6SS component proteins for each T6SS region:

*Minimum number of T6SS component protein types or domains for each T6SS region:

*BLAST Ha-value threshold for T6SS-related protein prediction:

*Percent identity for BLASTp search against T6SS component proteins:

应用信息

基于SecReT6数据库，鉴定并预测T6SS（六型分泌系统）基因簇和各种与T6SS相关的蛋白，包括T6SS调控蛋白（T6SRs）、T6SS辅助蛋白（T6SAs）、T6SS免疫蛋白（T6SIs）以及受体敏感性因子。仅支持上传完成图基因组。

Running time: <3min
Sample input: t6ss_input.gbk
Example output: SAMPLE result

参考文献

如果您在研究中使用了本工具，请在文章中引用下列文章:

TracePatho. 2025. TracePatho: All-in-one microbial analysis platform. Accessed July 9, 2025. https://tracepatho.com/.

Zhang J, Guan J, Wang M, et al. SecReT6 update: a comprehensive resource of bacterial Type VI Secretion Systems. Sci China Life Sci. 2023;66(3):626-634. doi:10.1007/s11427-022-2172-x